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The December Science café was held at the Bilik Serbaguna , Faculty of University Malaya on the 14th of December 2017. T...
26/12/2017

The December Science café was held at the Bilik Serbaguna , Faculty of University Malaya on the 14th of December 2017. The talk was mainly focused on statistic in medicine and missing data problems which was conducted by Dr Manimalar Selvi Naicker from the department of Pathology and Prof Dr Sanjay Rampal a/l Lekhraj Rampal and Associate Prof Dr Karuthan Chinna from department of social and preventive medicine.
In a nutshell the talk emphasised on the misuse of p-values and missing data in clinical studies. Dr Manimalar Selvi Naicker started introducing her title “regression analysis with missing data: The problem with p-values” with a brief history on how p-values were initially introduced by Dr Ronald Fisher (agricultural-statistician) into agriculture in 1925 which was later used in medicine around the 1950’s. She informed that Sir Austin Bradford Hill (pilot turned statistician!) in 1965 had alerted the medical community about the misuse of the p-value in medicine for treating patients. Dr Manimalar further showed articles by the American statistical Association which have notified the usage of p-values in clinical study to be wrong. She also stated the reason p-values are not accepted in clinical studies are actually due to the misinterpretation of the concepts of the p-values and its inappropriateness with missing data. Moreover, to understand the significance of p-value one must first have strong foundation in mathematics.
Dr Manimalar also gave a little insight on p-value firstly explaining that p-values are not one but a composite value. She also stated sample size and effect size affect the p-value, however a missing date leads to changes to both sample size and effect size changes resulting in change to p-value. Interestingly Dr Manimalar mentioned the usage of a common mathematical formula used to calculate sample size to be wrongly applied in clinical studies as it was designed for factory statistics, whereby experiments are repeated on a daily bases. Before ending her talk Dr Manimalar stated the usage of t-test to also be misused as they correspond with sample size and are inversely proportional to p-value. In fact, missing data creates bias, lack of precision and results is us not being able to isolate the real magnitude of confounding. Also, when sample size increases the t-value also increase, therefore t-value is only reliable as statistical significance but not clinical significance. She also stated that data imputation was essentially data fabrication but if the amount of missing data is small it is better to impute data to save the dataset.
Associate prof Dr Karuthan took over next to discuss ‘Types of missing data’. He supported Dr Manimalar’s statement by justifying the insignificance of p-values and how missing data could affect it. He mentioned that sample size are needed to minimise type 1 and type 2 errors and how p-values could be easily manipulated by sample size. Subsequently he stated in presence of missing data if the sample size increased the p-value would decrease resulting in increase in power. On the contrary, in clinical study if the sample size is too big the effectiveness of the study will decrease according to Dr Karuthan. Furthermore, he also stated in a clinical study the goal is always to obtain evidence and not perfect data or statistics hence the p-value is insignificance in missing data.
Consequently, missing data and higher p-value decreases the power hence to obtain a significance study some imputation should take place said Dr Karuthan. Imputing data could be done at random to maintain the sample size. For instance, if the variable containing missing data is not vital one is suggested to omit the variable in the study. Similarly to perform regression with known value and predict the unknown value by taking the average. Finally, Dr karuthan stated that there is no right way to impute data hence one should always avoid missing data in a study.
Finally the talk ended with Dr Sanjay explaining further about missing data stating that it could be prevented with high data quality. He stressed that data collection should be always monitored to prevent loss of data and immediate action should be taken if any had occurred. On the other hand, Dr Sanjay mentioned briefly about ignorable and non-ignorable data. Ignorable data can be changed whereby non-ignorable data acts as study’s limitation. He also explained how missing complete at random is associated with unobserved variable while data missing at random is associated with observed variable. Hence, this effects the validity, precision and power of the study. Agreeing with Dr Karuthan, Dr Sanjay mentioned if the missing data is of variable not of interest than it should be just avoided and no imputation required.

17/11/2017
The November Science café was held on 7th November 2017 at the multipurpose hall of Faculty of Medicine. This month the ...
17/11/2017

The November Science café was held on 7th November 2017 at the multipurpose hall of Faculty of Medicine. This month the Department of Anatomy had presented their study, the topics presented were ‘Histological evaluation of reproductive organs related to the natural product research’ by Dr Siti Rosmani Md Zin, ‘Neuroregenerative properties of Lignosus rhinocerotis (Cooke) Ryvarden: A behavioural analysis’ by Miss Luvanee Parkianathan and ‘Evaluation of subacute toxicity of Lignosus rhinocerotis (Cooke) Ryvarden on nervous tissues’ presented by Miss Maseeha Farha.

Before the Department of Anatomy presented their study, Dr Rafdzah Ahmad Zaki from Department of Social and Preventive Medicine has briefed about the MyOHUN (Malaysian One Health University Network) program and the opportunity available for their training and funding. She first defined MyOHUN, followed by introducing the sectors contributing to MyOHUN. Dr Rafdzah also covered MyOHUN’s objectives and stated the collaborating universities in South East Asia. Finally, she ended the talk by sharing some articles and photographs of previously accomplished workshops, fellowships and programs by MyOHUN.
Next began a talk by Dr Siti Rosmani Md Zin on the ‘Histological evaluation of reproductive organs related to the natural product research’. Dr Siti and her team had conducted the study to determine the potential reproductive and development toxicity using genistein as their natural product. Interestingly she mentioned genistein (a class of isoflavone) commonly found in soy bean which has binding affinity to estrogen receptors on the reproductive tissues. Dr Siti elaborated further about the interruption of ovarian follicular growth resulting in higher formation of atretic follicles in genistein treated rats compared to the control rats. Hence, she concluded that post exposure to genistein has anti-estrogenic effect on development on ovarian follicle, which may lead to impairment of fertility.
Next, followed by a talk from Miss Luvanee Parkianathan on ‘Neuroregenerative properties of Lingnosus rhinocerotis (Cooke) Ryvarden: A behavioural analysis’. She started off by sharing information about L. rhinocerotis also known as tiger’s milk mushroom that was used in her study. Miss Luvanee also mentioned the usage of this mushroom by the natives were originally to treat coughs or to boost energy for hunters. The aim of her study was to analyse the regenerative property of the indigenous mushroom on peripheral nerves.
Miss Luvanee Parkianathan explained that damaged nerves discontinue the impulse relay and disrupts the sensory and motor functions. However, she mentioned upon nerve damage, growth factor proliferates creating new myelin sheaths and guiding the reinnervation of nerve fibres into target organs to regain sensory and motor function. If regeneration is delayed it may result in denervation of target organs.
The parameters measured to analyse effects of L. rhinocerotis were injured hindlimb withdrawal and degree of toe spreading. They found out rats administered with low and high dosages of mushroom had quicker response rate on hot plate followed by enhancement of toe spreading reflex compared to negative controls and rats treated with mecobalamin, a commonly used drug to treat peripheral nerve disorders. She concluded that L. rhinocerotis enhanced peripheral nerve regeneration.
To further support Miss Luvanee Parkianathan’s study, Miss Maseeha Farha carried out a study titled ‘Evaluation of subacute toxicity of Lingnosus rhinocerotis (Cooke) Ryvarden on nervous tissues’. The main aim of this study was to provide evidence on the toxicity of L. rhinocerotis on peripheral and central nervous tissues. The desired nervous tissues were harvested for morphological analysis after oral administration of L. rhinocerotis. She mentioned that there were no pathological changes to the tissues in rats treated with the mushroom compared to negative controls and mecobalamin. Hence, the study proves that subacute oral administration of L. rhinocerotis had no adverse effects on the nervous tissues.
These groups also are looking for potential collaborators from various field interested in further future study for a better understanding of current data and information.

Contacts:
Dr Rafdzah Ahmad Zaki, [email protected]
Dr Siti Rosmani Md Zin, [email protected]
Miss Luvanee Parkianathan, [email protected]
Miss Maseeha Farha, [email protected]
Research Management Centre, Faculty of Medicine, UM, http://resfom.um.edu.my/
Science Café page:
Facebook: https://www.facebook.com/Science-Caf%C3%A9s-FOM-UM-1709286945988702/?ref=bookmarks

Next Science Café, 14th Dec, 1-2 PM, Bilik Serbaguna: Statistics in Medicine: Missing Data

Prepared by Shahmala, Yee Ling; Edited by Kah Hui, Siti

The recent Science Cafe was held on 13th September 2017 at the Lecture Hall of Medical Biotechnology Laboratory, Faculty...
20/10/2017

The recent Science Cafe was held on 13th September 2017 at the Lecture Hall of Medical Biotechnology Laboratory, Faculty of Medicine with the theme of ‘Epilepsy and Seizures’. The main objective of this monthly event is to encourage researchers to participate in epilepsy research network and to promote collaboration among clinical and non-clinical professionals that can lead to effective treatment.

Prof. Dr. Lim Kheng Seang started the presentation titled ‘Epilepsy Research Network’ by explaining the branches of epilepsy such as economics, psychology, statistics and epidemiology. As the treatments and medications for epilepsy continue to develop, the costs can become more expensive but the effectiveness of the treatments and medications are yet to be confirmed. This is where the economists play a role. Psychosocial team comes in when there is psychosocial problems such as education, employment, depressions and anxiety in patients. Epidemiologist helps with incidence, impact and relevance of epilepsy. Prof. Dr. Lim continued his talk by explaining his studies which subsequently become mega project in Malaysia, in which his tests were translated in various foreign languages such as Indonesian. He also works on stigma issues regarding epilepsy which is to be evaluated by a scale. Besides that, he works with biomedical engineers for further advancement of electroencephalogram (EEG) test. Then, he moved on to population study and links his study with genetics as predisposition of epilepsy by involving a group of statisticians to interpret the massive study data obtained.

Prof. Dr. Lim ended his speech by saying “good research begins from understanding our own strength to solve a research problem”. He also emphasized that being curious and questioning the unknown is the key to doing research and it is what got him into research. He is also currently seeking for potential collaborators from various fields. In a nutshell, the talk was very engaging as several research discussions were brought up among the researchers. It was clear that the audiences enjoyed the event as it was a jovial talk.

Contacts:
Prof. Dr. Nur Aishah Binti Mohd Taib, [email protected]
Associate Prof. Hazreen Bin Abdul Majid, [email protected]
Associate Prof. Dr. Ng Chong Guan, [email protected]
Dr Tania Islam, [email protected]
Research Management Centre, Faculty of Medicine, UM
http://resfom.um.edu.my/

14/09/2017

The recent Science Cafe was held on 13th September 2017 at the Lecture Hall of Medical Biotechnology Laboratory, Faculty of Medicine with the theme of ‘Epilepsy and Seizures’. The main objective of this monthly event is to encourage researchers to participate in epilepsy research network and to promote collaboration among clinical and non-clinical professionals that can lead to effective treatment.

Prof. Dr. Lim Kheng Seang started the presentation titled ‘Epilepsy Research Network’ by explaining the branches of epilepsy such as economics, psychology, statistics and epidemiology. As the treatments and medications for epilepsy continue to develop, the costs can become more expensive but the effectiveness of the treatments and medications are yet to be confirmed. This is where the economists play a role. Psychosocial team comes in when there is psychosocial problems such as education, employment, depressions and anxiety in patients. Epidemiologist helps with incidence, impact and relevance of epilepsy. Prof. Dr. Lim continued his talk by explaining his studies which subsequently become mega project in Malaysia, in which his tests were translated in various foreign languages such as Indonesian. He also works on stigma issues regarding epilepsy which is to be evaluated by a scale. Besides that, he works with biomedical engineers for further advancement of electroencephalogram (EEG) test. Then, he moved on to population study and links his study with genetics as predisposition of epilepsy by involving a group of statisticians to interpret the massive study data obtained.

Prof. Dr. Lim ended his speech by saying “good research begins from understanding our own strength to solve a research problem”. He also emphasized that being curious and questioning the unknown is the key to doing research and it is what got him into research. He is also currently seeking for potential collaborators from various fields. In a nutshell, the talk was very engaging as several research discussions were brought up among the researchers. It was clear that the audiences enjoyed the event as it was a jovial talk.

Contacts:
Prof. Dr. Lim Kheng Seang, [email protected]
Research Management Centre, Faculty of Medicine, UM
http://resfom.um.edu.my/
Science Café page:
https://www.facebook.com/Science-Caf%C3%A9s-FOM-UM-1709286945988702/

Prepared by Habibah, Neni, Ee Jing, Yee Ling; Read by Kheng Seang

resfom.um.edu.my

The recent Science Café with the theme, “Getting a foothold on mobility: Bedside to Lab” was held on 8th August 2017 at ...
14/08/2017

The recent Science Café with the theme, “Getting a foothold on mobility: Bedside to Lab” was held on 8th August 2017 at Bilik Serbaguna, Faculty of Medicine. The objective of this talk is to educate the audience on the complications of foot problems in diabetic patients and ways to improve their mobility.
The event started with Dr. Chung Tze Yang from Department of Rehabilitation Medicine. Dr. Chung discussed about various foot and ankle disorders from degenerative conditions to diabetic foot complications. Diabetic patients can develop foot pain and foot ulcers, but good foot care can help to prevent further complications. According to Dr. Chung the causes of diabetic foot, which is related to distribution of pressure on the foot. The effects of diabetic foot are varies such as loss of sensation, deformed foot, ulceration and end stage of diabetic foot which is amputation. Dr. Chung then introduced Multi-Disciplinary Diabetic Foot Care Clinics, which aims to protect and care for the feet of patients with diabetes. Nurses at Multi-Disciplinary Diabetic Foot Care Clinics are specially trained in handling patients with diabetic foot.
The second presentation was delivered by Dr. Rukmanikanthan Shanmugam from the Department of Orthopaedic Surgery on the topic of Reinventing the Wheel. According to Dr. Rukmanikanthan, foot is an important anatomical part of the body as plays many important functions. These include load bearing, leverage, shock absorption, balance and protection. Our foot can change structurally over time through living life style which can give rise to deformities. It was suggested that foot deformities can be managed by wearing special shoes. Besides, Dr. Rukmanikanthan’s current research includes development of shoes that can measure and monitor the gait and foot pressure. The change of pressure can serve as an indicator for diagnosing the occurrence and development of certain heath conditions.
Diabetes-related foot problems can affect quality of life and increase healthcare costs significantly. Thus, it is important to manage the problems to improve their quality of life. Overall, the presentations were intriguing as it sparked many questions from the participants. It was clear that the participants left with a noteworthy take-home message from the event.

Contacts:
Dr. Rukmanikanthan A/l Shanmugam, [email protected]
Dr. Chung Tze Yang, [email protected]

The monthly Science Cafe was held in the Bilik Serbaguna of Faculty of Medicine on 11th July 2017 (Tuesday) with the tit...
13/07/2017

The monthly Science Cafe was held in the Bilik Serbaguna of Faculty of Medicine on 11th July 2017 (Tuesday) with the title "Catching ideas in science". The talk was given by Prof. Dr. Ng Kwan Hoong from the Department of Biomedical Imaging and the University of Malaya Research Imaging Centre. Prof. Ng gave examples of some creative research ideas and explained how new ideas in science are generated. The sharing session started with the definitions of the word "idea" with quotes coming from the likes of philosophers and scientists such as Linus Pauling and Marvin Misky. Then, Prof. Ng demonstrated how there are 5 steps of producing ideas i.e. 1) gather raw material, 2) process the material, 3) forget the subject, 4) appearance of the idea, 5) test the idea. He also showed that creativity is linked to idea and it is needed in science. Quoting the Nobel laureate physicist, Max Planck, he elaborated that scientists need artistically creative imagination for new ideas. The talk carried on with examples of scientific discoveries that came from serendipity and that have made impacts in the world. These ideas come by accident, by chance and is a sudden inspiration. The role serendipity plays in discoveries in science include the X-ray by Wilhelm Conrad Rontgen, antibiotic Penicillin by Alexander Fleming, Velcro by George de Mestral and microneedles by researchers in Kansai University, Japan. Prof. Ng further introduced to us the Ig Nobel Price which is held annually by Harvard University. The award ceremony honours achievements in science that first make people laugh but at the same time make people think. In a nutshell, it celebrates unusual findings and researches that are not of the norm. Awardees from the year 2001, 2002 and 2013 - 2016 and their respective research findings were shared. Prof. Ng moved on to say that there are still many big questions of life and science which requires ideas to solve. He showed his current pursuit of trying to understand the cries of babies before concluding that research should be fun. Overall, the sharing session was amusing and eye-opening. The event saw almost a full house. During the question and answer/comment session, Prof. Debra Sim of Department of Pharmacology and Prof Yvonne Lim, Deputy dean of Faculty of Medicine pointed out that researchers are bound by their KPIs, requirement to publish, requirements of grant providers and how grand providers do not look at it the same way, despite agreeing that some fun should be injected into research. Nonetheless, the audience agreed that research and science should be fun and enjoyable and these pursuits can be achieved along the way as we fulfill our responsibilities.

The Science Café for the month of June was held on the 8th of June 2017 in Bilik Serbaguna from 1-2pm. The topic of disc...
16/06/2017

The Science Café for the month of June was held on the 8th of June 2017 in Bilik Serbaguna from 1-2pm. The topic of discussion was titled “Real-World Implementation Science in Action: Lessons Learned from Ukraine” and the talk was given by Prof. Dr. Frederick L. Altice. We were very fortunate to have such an esteemed and respected expert in the field of global public health and HIV research deliver the talk. Prof. Dr. Frederick l. Altice is a Professor of Medicine (Infectious Diseases) and of Epidemiology (Microbial Diseases) at Yale University and is the Director of Clinical and Community Research at Tale Univesity School of Medicine and School of Public Health. He is also a UM Academic Icon. The talk began with a brief introduction by the Dean of the Faculty of Medicine, University Malaya Ybhg. Prof. Dato' Dr. Adeeba Binti Kamarulzaman who has collaborated with Prof. Dr. Altice on a number of studies. The talk centered on implementation science studies and its applications to real-world healthcare practices. For this particular talk the discussion centered on implementation science in action to expand HIV prevention using medication-assisted therapies in the Ukraine. Throughout the talk the different criteria for a successful implementation science project was discussed. These included identifying the evidence-based intervention being disseminated, understanding implementation factors, and identifying potential implementation methods and targets. Prof. Dr. Altice also discussed the NIATx Model which is a facilitation model of process improvement specifically for behavioural health care settings that was used in the Ukraine to improve opioid agonist therapy outcomes. To conclude his talk Prof. Dr. Altice summarized on how implementation science provides a scientific method to determine if an evidence-based intervention is effective in real-world settings.

The Microbiome Science Café took place at Dewan Serbaguna (Faculty of Medicine, UM) on 9th May 2017 with the theme “It t...
12/05/2017

The Microbiome Science Café took place at Dewan Serbaguna (Faculty of Medicine, UM) on 9th May 2017 with the theme “It takes GUTs to study MICROBIOME”. The event started with Deputy Dean of Research, Professor Dr. Yvonne Lim Ai Lian, a parasitologist from Department of Parasitology, Faculty of Medicine. Prof Yvonne spoke about “Helminths and Gut Microbiota: Are they a palatable combination?” She emphasized that although helminth infections are known to cause diseases to the patients, studies have also shown that helminths could be regarded as friends and not just foes. Intestinal helminths have co-evolved together with their human hosts over several hundred million years, and to ensure their long-term survival, helminths have evolved crucial mechanisms to modulate the host immune response. This was discovered during their study conducted at Temuan subtribe of the indigenous population in the state of Selangor, Malaysia. Helminth infections were found to have influenced the diversity of the gut microbiota which played critical roles in regulating innate and adaptive immune homeostasis. The gut microbiota in helminth-positive individuals was more diverse than helminth-negative individuals. Helminths altered the composition of gut microbiota by triggering immunomodulation (increase mucus production) as a conductive environment for the growth of the “good” bacteria and thus reduce the “bad bacteria”.
Ms. Chua Ling Ling, a PhD candidate continued with her topic on “Microbial Signature in Childhood Cancer Survivors”. Adult childhood cancer survivors (CCS) have a higher risk of premature age-related comorbidities. Gut microbiota dysbiosis has been found to be associated with development of various diseases such as cardiovascular disease, diabetes, obesity. She proposed that this could be associated with the gut microbiota changes and immune dsyregulation in adult CCS. During the treatment of cancer, patient’s gut microbiota diversity may have decreased or changed due to the exposure to chemotherapy, high-dosage antibiotics, radiotherapy etc. These changes may persist into adulthood and affect the immune system, thereby increase the risk of comorbidities in CCS. From her findings, she noticed a reduction in gut microbiota diversity and a distinct microbiota profile in the adult of childhood cancer survivor (CCS). Several of the taxa that are differently abundant in the CCS (compared to controls) are also associated with blood inflammation markers.
Third presentation was delivered by Dr. Lee Soo Ching from Department of Parasitology, on the topic of “How to Visualize the Gut Microbiota Profile”. In her session, she introduced various visualization software that can be applied in the microbiome study. Information such as alpha diversity (species richness and evenness), beta diversity (compare species diversity between samples on how similar are these samples) and the prediction of microbial functions can be deduced by using various softwares. The most challenging in using this software is it requires the users to acquire basic programming knowledge such as Python and R programming language. In view of requests for such a training, a workshop will be organized on the 1st and 2nd August 2017 and the details of the workshop will be circulated through UMinfo soon.
Last but not least, the May 2017 Science Café ended with an inspiring speech by Professor Dr Yvonne. She mentioned that good research or collaboration always starts from understanding our own strength and knowing how to use our strength to solve a research problem. We have to be realistic about our strength and constraints by collaborating with those who can enhance our strength and complement our limitations. It is important to be aware of our next research plan and development by constantly keeping track of what our findings are telling us.
Overall, the content of the presentation impassioned great discussion on how powerful a data can be when analysed using various bioinformatics analyses. It was evident that those who attended the event found it captivating and thought-provoking.
Next Science Café: Prof Frederick L. Altice, Director of Clinical and Community Research, Yale University School of Medicine and School of Public Health, Title: Real-World Implementation Science in Action: Lessons Learned from Ukraine. 8th June 2017, 1-2PM Bilik Serbaguna,
Contact information:
Prof Yvonne Lim Ai Lian, [email protected]
Dr. Lee Soo Ching, [email protected]
Chua Ling Ling, [email protected]
Research Management Centre, Faculty of Medicine, UM
http://resfom.um.edu.my/

This month’s Science Café was co-hosted in Makmal Bioteknologi Perubatan by Department of Medical Microbiology and Paras...
18/04/2017

This month’s Science Café was co-hosted in Makmal Bioteknologi Perubatan by Department of Medical Microbiology and Parasitology. Its main aim was to learn about the successful communication strategies along with best practices for creating a collaborative atmosphere. There were more than 30 attendees.
The event was organized around the main theme for the presentations that covered various topics. Three speakers provided the context for the seminar. Prof Datin Indra spoke about the new paradigm for dengue surveillance. Her projects would not have been as successful without the steps taken by her collaborators from Universities and Ministry of Health. Dr Chandra has identified factors that contribute to successful partnerships and collaborations through her research projects including: Communication, Trust, Team work, Inspiration and etc. Prof Jamal I-Ching Sam through his talk about cross-disciplinary research collaborations suggested six elements for successful collaborations:
1. Right collaborator, right project? Don’t be afraid to say no!
2. Clarify roles, credit (authorship), IP
3. Be open and share
4. Communicate
5. Acknowledge/credit collaborators
6. Stick with good collaborators

The next Science Café will take place Tuesday 9th May 2017 at Bilik Serbaguna, theme: It takes Guts to study Microbiome.

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